Detailed information of SNP:
|
SNP ID:
sf1209949137(Gbrowse)
Chromosome: chr12 Position: 9949137 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 82.24% | 17.76% |
| All Indica | 795 | 74.47% | 25.53% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 68.10% | 31.90% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209949137 | A->C | INTERGENIC | None |