Detailed information of SNP:
|
SNP ID:
sf1209949308(Gbrowse)
Chromosome: chr12 Position: 9949308 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 67.51% | 32.49% |
| All Indica | 764 | 50.52% | 49.48% |
| All Japonica | 490 | 90.82% | 9.18% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 359 | 44.85% | 55.15% |
| Indica II | 203 | 57.14% | 42.86% |
| Indica Intermediate | 202 | 53.96% | 46.04% |
| Temperate Japonica | 331 | 92.45% | 7.55% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209949308 | T->A | INTERGENIC | None |