Detailed information of SNP:
|
SNP ID:
sf1209950601(Gbrowse)
Chromosome: chr12 Position: 9950601 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 67.92% | 32.08% |
| All Indica | 771 | 51.36% | 48.64% |
| All Japonica | 494 | 90.49% | 9.51% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 363 | 46.28% | 53.72% |
| Indica II | 209 | 57.89% | 42.11% |
| Indica Intermediate | 199 | 53.77% | 46.23% |
| Temperate Japonica | 333 | 92.49% | 7.51% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209950601 | A->G | INTERGENIC | None |