Detailed information of SNP:
|
SNP ID:
sf1209958854(Gbrowse)
Chromosome: chr12 Position: 9958854 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 93.93% | 6.07% |
| All Indica | 749 | 89.45% | 10.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 346 | 89.88% | 10.12% |
| Indica II | 203 | 90.15% | 9.85% |
| Indica Intermediate | 200 | 88.00% | 12.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209958854 | A->G | INTERGENIC | None |