Detailed information of SNP:
|
SNP ID:
sf1209959602(Gbrowse)
Chromosome: chr12 Position: 9959602 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 54.57% | 45.43% |
| All Indica | 786 | 81.55% | 18.45% |
| All Japonica | 486 | 8.64% | 91.36% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 368 | 81.52% | 18.48% |
| Indica II | 209 | 78.95% | 21.05% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 327 | 3.36% | 96.64% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209959602 | T->C | INTERGENIC | None |