Detailed information of SNP:
|
SNP ID:
sf1209984745(Gbrowse)
Chromosome: chr12 Position: 9984745 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 799 | 48.94% | 51.06% |
| All Japonica | 496 | 87.50% | 12.50% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 31.20% | 68.80% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209984745 | A->T | LOC_Os12g17420(LOC_Os12g17420.1) | Non-Synonymous SNP |