Detailed information of SNP:
|
SNP ID:
sf1209994793(Gbrowse)
Chromosome: chr12 Position: 9994793 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 79.39% | 20.61% |
| All Indica | 787 | 64.93% | 35.07% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 70.89% | 29.11% |
| Indica II | 210 | 67.14% | 32.86% |
| Indica Intermediate | 206 | 51.94% | 48.06% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209994793 | G->A | INTERGENIC | None |