Detailed information of SNP:
|
SNP ID:
sf1210019366(Gbrowse)
Chromosome: chr12 Position: 10019366 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 63.27% | 36.73% |
| All Indica | 765 | 92.55% | 7.45% |
| All Japonica | 486 | 12.96% | 87.04% |
| Aus | 60 | 95.00% | 5.00% |
| Indica I | 348 | 90.80% | 9.20% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 332 | 6.02% | 93.98% |
| Tropical Japonica | 92 | 32.61% | 67.39% |
| Japonica Intermediate | 62 | 20.97% | 79.03% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210019366 | A->G | LOC_Os12g17500(LOC_Os12g17500.1) | Non-Synonymous SNP |