Detailed information of SNP:
|
SNP ID:
sf1210020267(Gbrowse)
Chromosome: chr12 Position: 10020267 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 61.45% | 38.55% |
| All Indica | 792 | 90.15% | 9.85% |
| All Japonica | 494 | 12.15% | 87.85% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 369 | 88.08% | 11.92% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210020267 | T->C | INTERGENIC | None |