Detailed information of SNP:
|
SNP ID:
sf1210021243(Gbrowse)
Chromosome: chr12 Position: 10021243 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1233 | 62.69% | 37.31% |
| All Indica | 631 | 37.40% | 62.60% |
| All Japonica | 490 | 96.12% | 3.88% |
| Aus | 62 | 51.61% | 48.39% |
| Indica I | 281 | 54.80% | 45.20% |
| Indica II | 178 | 19.66% | 80.34% |
| Indica Intermediate | 172 | 27.33% | 72.67% |
| Temperate Japonica | 330 | 98.18% | 1.82% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210021243 | T->C | INTERGENIC | None |