Detailed information of SNP:
|
SNP ID:
sf1210021275(Gbrowse)
Chromosome: chr12 Position: 10021275 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1249 | 61.97% | 38.03% |
| All Indica | 646 | 36.22% | 63.78% |
| All Japonica | 493 | 96.35% | 3.65% |
| Aus | 61 | 52.46% | 47.54% |
| Indica I | 296 | 52.36% | 47.64% |
| Indica II | 179 | 18.44% | 81.56% |
| Indica Intermediate | 171 | 26.90% | 73.10% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210021275 | T->C | INTERGENIC | None |