Detailed information of SNP:
|
SNP ID:
sf1210053129(Gbrowse)
Chromosome: chr12 Position: 10053129 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1148 | 50.44% | 49.56% |
| All Indica | 636 | 76.57% | 23.43% |
| All Japonica | 446 | 12.56% | 87.44% |
| Aus | 30 | 53.33% | 46.67% |
| Indica I | 268 | 83.96% | 16.04% |
| Indica II | 190 | 63.16% | 36.84% |
| Indica Intermediate | 178 | 79.78% | 20.22% |
| Temperate Japonica | 325 | 11.38% | 88.62% |
| Tropical Japonica | 65 | 3.08% | 96.92% |
| Japonica Intermediate | 56 | 30.36% | 69.64% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 35 | 54.29% | 45.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210053129 | T->C | INTERGENIC | None |