Detailed information of SNP:
|
SNP ID:
sf1210088317(Gbrowse)
Chromosome: chr12 Position: 10088317 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 73.05% | 26.95% |
| All Indica | 724 | 59.25% | 40.75% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 62 | 35.48% | 64.52% |
| Indica I | 337 | 72.11% | 27.89% |
| Indica II | 196 | 41.84% | 58.16% |
| Indica Intermediate | 191 | 54.45% | 45.55% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210088317 | A->G | LOC_Os12g17620(LOC_Os12g17620.1) | Synonymous |