Detailed information of SNP:
|
SNP ID:
sf1210095609(Gbrowse)
Chromosome: chr12 Position: 10095609 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 87.13% | 12.87% |
| All Indica | 707 | 79.07% | 20.93% |
| All Japonica | 490 | 99.39% | 0.61% |
| Aus | 48 | 77.08% | 22.92% |
| Indica I | 336 | 89.58% | 10.42% |
| Indica II | 190 | 68.42% | 31.58% |
| Indica Intermediate | 181 | 70.72% | 29.28% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210095609 | G->A | INTERGENIC | None |