Detailed information of SNP:
|
SNP ID:
sf1210102375(Gbrowse)
Chromosome: chr12 Position: 10102375 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 53.26% | 46.74% |
| All Indica | 770 | 32.47% | 67.53% |
| All Japonica | 492 | 91.26% | 8.74% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 354 | 42.09% | 57.91% |
| Indica II | 208 | 23.08% | 76.92% |
| Indica Intermediate | 208 | 25.48% | 74.52% |
| Temperate Japonica | 332 | 94.28% | 5.72% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210102375 | T->C | LOC_Os12g17640(LOC_Os12g17640.1) | Synonymous |