Detailed information of SNP:
|
SNP ID:
sf1210102662(Gbrowse)
Chromosome: chr12 Position: 10102662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 95.98% | 4.02% |
| All Indica | 760 | 95.13% | 4.87% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 58 | 93.10% | 6.90% |
| Indica I | 366 | 99.18% | 0.82% |
| Indica II | 196 | 90.82% | 9.18% |
| Indica Intermediate | 198 | 91.92% | 8.08% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210102662 | G->A | LOC_Os12g17640(LOC_Os12g17640.1) | Non-Synonymous SNP |