Detailed information of SNP:
|
SNP ID:
sf1210107326(Gbrowse)
Chromosome: chr12 Position: 10107326 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.44% | 36.56% |
| All Indica | 798 | 49.37% | 50.63% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 47.73% | 52.27% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210107326 | G->T | INTERGENIC | None |