Detailed information of SNP:
|
SNP ID:
sf1210108474(Gbrowse)
Chromosome: chr12 Position: 10108474 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.55% | 35.45% |
| All Indica | 799 | 47.81% | 52.19% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210108474 | G->A | INTERGENIC | None |