Detailed information of SNP:
|
SNP ID:
sf1210126038(Gbrowse)
Chromosome: chr12 Position: 10126038 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1196 | 82.61% | 17.39% |
| All Indica | 612 | 71.57% | 28.43% |
| All Japonica | 489 | 96.73% | 3.27% |
| Aus | 45 | 95.56% | 4.44% |
| Indica I | 292 | 65.75% | 34.25% |
| Indica II | 165 | 84.24% | 15.76% |
| Indica Intermediate | 155 | 69.03% | 30.97% |
| Temperate Japonica | 329 | 97.87% | 2.13% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210126038 | C->T | INTERGENIC | None |