Detailed information of SNP:
|
SNP ID:
sf1210128254(Gbrowse)
Chromosome: chr12 Position: 10128254 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1192 | 51.85% | 48.15% |
| All Indica | 615 | 21.79% | 78.21% |
| All Japonica | 485 | 91.34% | 8.66% |
| Aus | 47 | 46.81% | 53.19% |
| Indica I | 269 | 24.54% | 75.46% |
| Indica II | 197 | 15.23% | 84.77% |
| Indica Intermediate | 149 | 25.50% | 74.50% |
| Temperate Japonica | 330 | 96.36% | 3.64% |
| Tropical Japonica | 89 | 74.16% | 25.84% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 34 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210128254 | G->T | LOC_Os12g17690(LOC_Os12g17690.1) | INTRON |