Detailed information of SNP:
|
SNP ID:
sf1210128326(Gbrowse)
Chromosome: chr12 Position: 10128326 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.05% | 35.95% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 495 | 10.30% | 89.70% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210128326 | T->C | LOC_Os12g17690(LOC_Os12g17690.1) | INTRON |