Detailed information of SNP:
|
SNP ID:
sf1210128345(Gbrowse)
Chromosome: chr12 Position: 10128345 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 65.72% | 34.28% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 493 | 10.95% | 89.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210128345 | A->G | LOC_Os12g17690(LOC_Os12g17690.1) | Synonymous |