Detailed information of SNP:
|
SNP ID:
sf1210131339(Gbrowse)
Chromosome: chr12 Position: 10131339 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.98% | 32.02% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 15.93% | 84.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 7.19% | 92.81% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210131339 | T->C | LOC_Os12g17690(LOC_Os12g17690.1) | Non-Synonymous SNP |