Detailed information of SNP:
|
SNP ID:
sf1210138224(Gbrowse)
Chromosome: chr12 Position: 10138224 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 89.88% | 10.12% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 493 | 87.42% | 12.58% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210138224 | G->A | LOC_Os12g17700(LOC_Os12g17700.1) | UTR_3_PRIME |