Detailed information of SNP:
|
SNP ID:
sf1210157532(Gbrowse)
Chromosome: chr12 Position: 10157532 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 78.72% | 21.28% |
| All Indica | 772 | 63.21% | 36.79% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 364 | 62.91% | 37.09% |
| Indica II | 208 | 64.90% | 35.10% |
| Indica Intermediate | 200 | 62.00% | 38.00% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210157532 | A->G | LOC_Os12g17740(LOC_Os12g17740.1) | Non-Synonymous SNP |