Detailed information of SNP:
|
SNP ID:
sf1210159334(Gbrowse)
Chromosome: chr12 Position: 10159334 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 66.52% | 33.48% |
| All Indica | 773 | 92.37% | 7.63% |
| All Japonica | 490 | 21.84% | 78.16% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 366 | 93.99% | 6.01% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 199 | 93.97% | 6.03% |
| Temperate Japonica | 330 | 13.03% | 86.97% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210159334 | A->G | LOC_Os12g17740(LOC_Os12g17740.1) | Non-Synonymous SNP |