Detailed information of SNP:
|
SNP ID:
sf1210163890(Gbrowse)
Chromosome: chr12 Position: 10163890 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 97.31% | 2.69% |
| All Indica | 755 | 95.23% | 4.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 96.37% | 3.63% |
| Indica II | 201 | 92.04% | 7.96% |
| Indica Intermediate | 196 | 96.43% | 3.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210163890 | G->A | LOC_Os12g17750(LOC_Os12g17750.1) | Synonymous |