Detailed information of SNP:
|
SNP ID:
sf1210163998(Gbrowse)
Chromosome: chr12 Position: 10163998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 66.62% | 33.38% |
| All Indica | 793 | 51.70% | 48.30% |
| All Japonica | 496 | 86.09% | 13.91% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 370 | 51.62% | 48.38% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210163998 | C->T | LOC_Os12g17750(LOC_Os12g17750.1) | Synonymous |