Detailed information of SNP:
|
SNP ID:
sf1210186896(Gbrowse)
Chromosome: chr12 Position: 10186896 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.36% | 7.64% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 493 | 87.02% | 12.98% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210186896 | C->T | LOC_Os12g17800(LOC_Os12g17800.1) | INTRON |