Detailed information of SNP:
|
SNP ID:
sf1210196831(Gbrowse)
Chromosome: chr12 Position: 10196831 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 95.74% | 4.26% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 490 | 99.18% | 0.82% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210196831 | G->A | INTERGENIC | None |