Detailed information of SNP:
|
SNP ID:
sf1210203466(Gbrowse)
Chromosome: chr12 Position: 10203466 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.81% | 7.19% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210203466 | C->T | INTERGENIC | None |