Detailed information of SNP:
|
SNP ID:
sf1210214289(Gbrowse)
Chromosome: chr12 Position: 10214289 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 69.14% | 30.86% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 494 | 19.03% | 80.97% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210214289 | A->G | INTERGENIC | None |