Detailed information of SNP:
|
SNP ID:
sf1210215308(Gbrowse)
Chromosome: chr12 Position: 10215308 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.63% | 32.37% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210215308 | C->T | INTERGENIC | None |