Detailed information of SNP:
|
SNP ID:
sf1210223083(Gbrowse)
Chromosome: chr12 Position: 10223083 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 56.79% | 43.21% |
| All Indica | 796 | 83.79% | 16.21% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210223083 | T->C | INTERGENIC | None |