Detailed information of SNP:
|
SNP ID:
sf1210228623(Gbrowse)
Chromosome: chr12 Position: 10228623 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.90% | 35.10% |
| All Indica | 794 | 93.70% | 6.30% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210228623 | A->G | INTERGENIC | None |