Detailed information of SNP:
|
SNP ID:
sf1210233603(Gbrowse)
Chromosome: chr12 Position: 10233603 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.60% | 7.40% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210233603 | G->A | LOC_Os12g17860(LOC_Os12g17860.1) | Synonymous |