Detailed information of SNP:
|
SNP ID:
sf1210249755(Gbrowse)
Chromosome: chr12 Position: 10249755 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 83.84% | 16.16% |
| All Indica | 730 | 76.03% | 23.97% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 337 | 60.83% | 39.17% |
| Indica II | 201 | 94.53% | 5.47% |
| Indica Intermediate | 192 | 83.33% | 16.67% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210249755 | G->A | INTERGENIC | None |