Detailed information of SNP:
|
SNP ID:
sf1210256606(Gbrowse)
Chromosome: chr12 Position: 10256606 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 81.53% | 18.47% |
| All Indica | 797 | 80.18% | 19.82% |
| All Japonica | 497 | 86.92% | 13.08% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210256606 | G->A | INTERGENIC | None |