Detailed information of SNP:
|
SNP ID:
sf1210264892(Gbrowse)
Chromosome: chr12 Position: 10264892 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 65.06% | 34.94% |
| All Indica | 797 | 93.60% | 6.40% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210264892 | A->G | INTERGENIC | None |