Detailed information of SNP:
|
SNP ID:
sf1210311230(Gbrowse)
Chromosome: chr12 Position: 10311230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 60.79% | 39.21% |
| All Indica | 797 | 54.58% | 45.42% |
| All Japonica | 497 | 71.43% | 28.57% |
| Aus | 63 | 47.62% | 52.38% |
| Indica I | 374 | 45.99% | 54.01% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210311230 | G->A | INTERGENIC | None |