Detailed information of SNP:
|
SNP ID:
sf1210326588(Gbrowse)
Chromosome: chr12 Position: 10326588 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 58.47% | 41.53% |
| All Indica | 726 | 48.62% | 51.38% |
| All Japonica | 492 | 72.36% | 27.64% |
| Aus | 59 | 54.24% | 45.76% |
| Indica I | 343 | 41.69% | 58.31% |
| Indica II | 192 | 54.69% | 45.31% |
| Indica Intermediate | 191 | 54.97% | 45.03% |
| Temperate Japonica | 331 | 78.55% | 21.45% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210326588 | A->G | INTERGENIC | None |