Detailed information of SNP:
|
SNP ID:
sf1210326605(Gbrowse)
Chromosome: chr12 Position: 10326605 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.68% | 38.32% |
| All Indica | 797 | 55.08% | 44.92% |
| All Japonica | 497 | 71.63% | 28.37% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 46.67% | 53.33% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210326605 | G->A | INTERGENIC | None |