Detailed information of SNP:
|
SNP ID:
sf1210328787(Gbrowse)
Chromosome: chr12 Position: 10328787 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 62.92% | 37.08% |
| All Indica | 780 | 81.54% | 18.46% |
| All Japonica | 495 | 30.10% | 69.90% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 366 | 85.52% | 14.48% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 204 | 80.88% | 19.12% |
| Temperate Japonica | 334 | 24.25% | 75.75% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210328787 | T->C | LOC_Os12g17980(LOC_Os12g17980.1) | Non-Synonymous SNP |