Detailed information of SNP:
|
SNP ID:
sf1210329637(Gbrowse)
Chromosome: chr12 Position: 10329637 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 66.02% | 33.98% |
| All Indica | 776 | 86.21% | 13.79% |
| All Japonica | 497 | 30.38% | 69.62% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 87.80% | 12.20% |
| Indica II | 203 | 83.74% | 16.26% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210329637 | A->G | INTERGENIC | None |