Detailed information of SNP:
|
SNP ID:
sf1210330533(Gbrowse)
Chromosome: chr12 Position: 10330533 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 70.57% | 29.43% |
| All Indica | 783 | 92.72% | 7.28% |
| All Japonica | 494 | 30.77% | 69.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 94.54% | 5.46% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 334 | 24.85% | 75.15% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210330533 | T->G | LOC_Os12g17990(LOC_Os12g17990.1) | Non-Synonymous SNP |