Detailed information of SNP:
|
SNP ID:
sf1210330744(Gbrowse)
Chromosome: chr12 Position: 10330744 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 91.44% | 8.56% |
| All Indica | 776 | 93.81% | 6.19% |
| All Japonica | 491 | 87.37% | 12.63% |
| Aus | 55 | 90.91% | 9.09% |
| Indica I | 363 | 92.84% | 7.16% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 330 | 83.64% | 16.36% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210330744 | A->G | LOC_Os12g17990(LOC_Os12g17990.1) | Synonymous |