Detailed information of SNP:
|
SNP ID:
sf1210351051(Gbrowse)
Chromosome: chr12 Position: 10351051 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 80.81% | 19.19% |
| All Indica | 764 | 71.07% | 28.93% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 356 | 74.72% | 25.28% |
| Indica II | 209 | 66.99% | 33.01% |
| Indica Intermediate | 199 | 68.84% | 31.16% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210351051 | T->C | LOC_Os12g18010(LOC_Os12g18010.1) | Synonymous |