Detailed information of SNP:
|
SNP ID:
sf1210351679(Gbrowse)
Chromosome: chr12 Position: 10351679 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 59.69% | 40.31% |
| All Indica | 781 | 84.64% | 15.36% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 367 | 85.01% | 14.99% |
| Indica II | 211 | 84.36% | 15.64% |
| Indica Intermediate | 203 | 84.24% | 15.76% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210351679 | A->G | LOC_Os12g18010(LOC_Os12g18010.1) | INTRON |
| sf1210351679 | A->G | LOC_Os12g18010(LOC_Os12g18010.1) | SNPs that disrupt splice sites |