Detailed information of SNP:
|
SNP ID:
sf1210357140(Gbrowse)
Chromosome: chr12 Position: 10357140 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 96.75% | 3.25% |
| All Indica | 772 | 94.82% | 5.18% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 361 | 94.46% | 5.54% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 204 | 97.06% | 2.94% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210357140 | G->A | INTERGENIC | None |