Detailed information of SNP:
SNP ID:
sf1210365735(Gbrowse)
Chromosome: chr12 Position: 10365735 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1398 | 79.54% | 20.46% |
All Indica | 783 | 66.54% | 33.46% |
All Japonica | 496 | 99.80% | 0.20% |
Aus | 65 | 76.92% | 23.08% |
Indica I | 367 | 56.68% | 43.32% |
Indica II | 207 | 75.36% | 24.64% |
Indica Intermediate | 209 | 75.12% | 24.88% |
Temperate Japonica | 334 | 99.70% | 0.30% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1210365735 | T->G | LOC_Os12g18030(LOC_Os12g18030.1) | INTRON |