Detailed information of SNP:



SNP ID: sf1210365735(Gbrowse)

Chromosome: chr12

Position: 10365735
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1398 79.54% 20.46%
All Indica783 66.54% 33.46%
All Japonica496 99.80% 0.20%
Aus65 76.92% 23.08%
Indica I367 56.68% 43.32%
Indica II207 75.36% 24.64%
Indica Intermediate209 75.12% 24.88%
Temperate Japonica334 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 71.43% 28.57%
Intermediate40 90.00% 10.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1210365735 T->G LOC_Os12g18030(LOC_Os12g18030.1) INTRON